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18.8: Thiols and Sulfides

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    36372
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    Objectives

    After completing this section, you should be able to

      1. write the IUPAC name of a thiol, given its Kekulé, condensed or shorthand structure.
      2. draw the structure of a thiol, given its IUPAC name.
      3. write an equation to represent the formation of a thiol by the reaction of hydrosulfide anion with an alkyl halide.
      4. write an equation to illustrate the preparation of a thiol by the reaction of thiourea with an alkyl halide.
    1. write an equation to show the interconversion between thiols and disulfides.
      1. write the name of a sulfide, given its structure.
      2. draw the structure of a sulfide, given its name.
      3. write an equation showing how a sulfide may be prepared by the reaction of a thiolate anion on an alkyl halide.
      4. identify the product from the reaction of a given alkyl halide with a given thiolate anion.
      5. identify the reagents necessary to prepare a given sulfide.
      6. write an equation to illustrate the formation of a trialkylsulfonium salt from a sulfide and an alkyl halide.
    Key Terms

    Note: All of these terms are defined in the “Study Notes,” below.

    • disulfide
    • mercapto group
    • (organic) sulfide
    • sulfone
    • sulfoxide
    • thiol
    • thiolate anion
    • trialkylsulfonium ion (trialkylsulfonium salt)
    Study Notes

    The chemistry of sulfur-containing organic compounds is often omitted from introductory organic chemistry courses. However, we have included a short section on these compounds, not for the sake of increasing the amount of material to be digested, but because much of the chemistry of these substances can be predicted from a knowledge of their oxygen-containing analogues.

    A thiol is a compound which contains an SH functional group. The SH group itself is called a mercapto group. A disulfide is a compound containing an S-S linkage.

    (Organic) sulfides have the structure R-S-R′, and are therefore the sulfur analogues of ethers. The nomenclature of sulfides can be easily understood if one understands the nomenclature of the corresponding ethers. Notice that the term “thio” is also used in inorganic chemistry. For example, SO42 is the sulfate ion; while S2O32, in which one of the oxygen atoms of a sulfate ion has been replaced by a sulfur atom, is called thiosulfate.

    Thiolate anions, RS-, are analogous to alkoxy anions, RO-. Thiolate anions are better nucleophiles than are alkoxy anions.

    If you have trouble understanding why trialkylsulfonium ions are formed, think of them as being somewhat similar to the hydronium ions that are formed by protonating water:

    Line-bond structural formulas of a hydronium ion on the left and a trialkylsulfonium ion on the right

    Later we shall see examples of tetraalkylammonium ions, R4N+, which again may be regarded as being similar to hydronium ions.

    Sulfoxides and sulfones are obtained by oxidizing organic sulfides. You need not memorize the methods used to carry out these oxidations.

    Line-bond structural formulas of sulfide on the left, sulfoxide in the middle, and sulfone on the right

    Table 18.1, below, provides a quick comparison of oxygen-containing and sulfur-containing organic compounds.

    Table 18.1 Comparison of compounds containing oxygen and sulfur
    Oxygen-containing Compound Sulfur Analogue
    ether, R-O-R′ sulfide, R-S-R′
    alkoxy anion, RO- thiolate anion, RS-
    alcohol, ROH thiol, RSH
    hydroxy group, OH- mercapto group, SH-
    peroxide, R-O-O-R′ disulfide, R-S-S-R′

    Note that when we name thiols, we include the “e” of the alkane name. Thus, CH3CH2SH is called “ethanethiol,” not “ethanthiol.”

    Thiols and sulfides are the "sulfur equivalent" of alcohols and ethers. You can replace the oxygen atom of an alcohol with a sulfur atom to make a thiol; similarly, you can replace the oxygen atom in an ether with S to make the corresponding alkyl sulfide. This is because thiols contain the C-S-H functional group, while sulfides contain the C-S-C group.

    Oxidation States of Sulfur Compounds

    Oxygen assumes only two oxidation states in its organic compounds (–1 in peroxides and –2 in other compounds). Sulfur, on the other hand, is found in oxidation states ranging from –2 to +6, as shown in the following table (some simple inorganic compounds are displayed in orange).

    Table showing sulfur oxidation states in organic compounds

    Thiols

    Thiols are often called “mercaptans,” a reference to the Latin term mercurium captans (capturing mercury), since the -SH group forms strong bonds with mercury and its ions. Thiols are analogous to alcohols. Thiols are weakly acidic (pKa ~ 10) and are much stronger acids than alcohols (pKa ~ 16). However, thiols usually do not form hydrogen bonds due to the sulfur atom not have sufficient electronegativity. Thiols named using the same rules as alcohols except the parent chain is named as alkane with the suffix -thiol added. As a substituent the -SH group is called a mercapto group.

    Thiol Nomenclature.svg

    Thiols are usually prepared by using the hydrosulfide anion (-SH) as a nucleophile in an SN2 reaction with alkyl halides.

    HS mechanism.svg

    One problem with this reaction is that the thiol product can deprotonate and undergo a second SN2 reaction with an additional alkyl halide to produce a sulfide side product. This problem can be solved by using thiourea, (NH2)2C=S, as the nucleophile. The SN2 reaction first produces an alkyl isothiourea salt as an intermediate. This salt is then hydrolyzed to form the thiol by a reaction with aqueous base.

    Thiourea synthesis.svg

    Disulfides

    Thiols (R-S-H) can be oxidized to form disulfides (R-S-S-R') through reaction with Br2 or I2. Note, an equivalent oxidation of alcohols (R-O-H) to peroxides (R-O-O-R') is not normally observed. The reasons for this different behavior becomes clear when looking at bond strengths. The S–S single bond in disulfides is nearly twice as strong as the O–O bond in peroxides. Also, the O–H bond in alcohols is more than 25 kcal/mole stronger than the S–H bond in thiols. Thus, thermodynamics favors disulfide formation over peroxide. Disulfides can easily be reduced back to a thiols through reaction with zinc and acid.

    clipboard_e6509fd247c9cfd0e737ef572c78630fa.png

    Disulfide bridges in proteins

    Disulfide (sulfur-sulfur) linkages between two cysteine residues are an integral component of the three-dimensional structure of many proteins. The interconversion between thiols and disulfide groups is a redox reaction: the thiol is the reduced state, and the disulfide is the oxidized state.

    Molecular structures of a reduced, free thiol on the left and an oxidized disulfide on the right

    Notice that in the oxidized (disulfide) state, each sulfur atom has lost a bond to hydrogen and gained a bond to a sulfur - this is why the disulfide state is considered to be oxidized relative to the thiol state. The redox agent that mediates the formation and degradation of disulfide bridges in most proteins is glutathione, a versatile coenzyme. Recall that the important functional group in glutathione is the thiol, highlighted in blue in the figure below. In its reduced (free thiol) form, glutathione is abbreviated 'GSH'.

    Wedge-dash structure of glutathione (GSH)

    In its oxidized form, glutathione exists as a dimer of two molecules linked by a disulfide group, and is abbreviated 'GSSG'. A new disulfide in a protein forms via a 'disulfide exchange' reaction with GSSG, a process that can be described as a combination of two SN2-like attacks. The end result is that a new cysteine-cysteine disulfide forms at the expense of the disulfide in GSSG.

    image154.png

    In its reduced (thiol) state, glutathione can reduce disulfides bridges in proteins through the reverse of the above reaction.

    Sulfides

    Sulfides are named using the same rules as ethers except sulfide is used in the place of ether. For more complex substances, alkylthio is used in place of alkoxy.

    Sulfide Nomenclature.svg

    Sulfur analogs of ethers are called sulfides. Sulfides are less common than thiols as naturally occurring compounds. However, sulfides—especially disulfides (C-S-S-C)—have important biological functions, mainly in reducing agents (antioxidants).

    Since thiols are weakly acidic their conjugate bases, called thiolate ions, can be easily formed through reaction with a strong base such as NaH. Thiolates have proven to be excellent nucleophiles and easily undergo SN2 reactions with primary and secondary alkyl halides to form sulfides. The reaction is analogous to the Williamson ether synthesis previously discussed in this chapter (Section 18-2)

    Sn2 reaction sulfide.svg

    The chemical behavior of sulfides contrasts with that of ethers in some important ways. Because sulfur's valence electrons involve 3P orbitals they are further away and less tightly held than the valence electrons on oxygen which involve 2P orbitals. This makes the nucleophilicity of sulfur atoms much greater than that of oxygen, leading to a number of interesting and useful electrophilic substitutions of sulfur that are not normally observed for oxygen. For instance, sulfides, unlike ethers, easily react with primary alkyl halides through an SN2 mechanism to give ternary sulfonium ions (R3S+) in the same manner that 3º-amines can be alkylated to form quaternary ammonium salts. Although equivalent oxonium salts of ethers are known, they are only prepared under extreme conditions, and are exceptionally reactive.

    Biological Sulfonium Ion Formation

    In biological systems the sulfonium ion, S-adenosylmethionine (SAM), is formed by a SN2 reaction between the nucleophilic sulfur atom of the amino acid methionine and the electrophilic methene (CH2) carbon of adenosine triphosphate (ATP). This reaction is unusually in that the triphosphate ion is removed from ATP as a leaving group. In most cases biological nucleophiles attack an electrophilic phosphorus on ATP causing a diphosphate ion to be removed as the leaving group.

    clipboard_e4b0957e3cc75ff8c09882659bb8b2578.png

    The sulfonium ion in SAM is an effective methylating agent. Through an SN2 reaction, biological nucleophiles can attack the electrophilic methyl group bonded to the positively charged sulfonium ion and cause the removal of a neutral sulfide as a leaving group. An example of this reaction is the catechol-O-methyltransferase catalyzed O-methylation of norepinephrin by SAM to produce adrenaline.

    clipboard_ee99ddd172d21755f70af4642114179f1.png

    Sulfides can be easily oxidized. Reacting a sulfide with hydrogen peroxide, H2O2, as room temperature produces a sulfoxide (R2SO). The oxidation can be continued by reaction with a peroxyacid, such as peracetic acid (CH3CO3H), to produce the sulfone (R2SO2).

    Sulfoxid and Sulfone.svg

    A common example of a sulfoxide is the solvent dimethyl sulfoxide (DMSO). DMSO is considered a polar aprotic solvent.

    dmso.gif

    DMSO is a very polar, aprotic solvent

    Exercise \(\PageIndex{1}\)

    Give IUPAC names the following compounds:

    a)

    Question 1a.png

    b)

    Question 1b.png

    c)

    Question 1c.png

    d)

    Question 1d.png

    e)

    Question 1e.png

    f)

    Question 1f.png

    Answer

    a) 2-Pentanethiol

    b) 2,2,5-Trimethyl-4-heptanethiol

    c) 3-Cyclopentene-1-thiol

    d) Methyl isopropyl sulfide

    e) p-Di(methylthio)benzene

    f) 2-(Ethylthio)cyclohexanone

    Exercise \(\PageIndex{2}\)

    The molecule 3-methyl-1-butanethiol has been shown to be one of the components of skunk spray. How would make the following conversions?

    a)

    Question 2A.png

    b)

    Question 2B.png

    Answers

    a) 1) HBr & Peroxides, 2) (NH2)2C=S, 3) NaOH & H2O

    b) 1) LiAlH4, 2) PBr3, 3) (NH2)2C=S, 4) NaOH & H2O


    18.8: Thiols and Sulfides is shared under a CC BY-SA 4.0 license and was authored, remixed, and/or curated by Steven Farmer & Dietmar Kennepohl.

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