Appendix II: Review of laboratory synthesis reactions
- Page ID
- 395045
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\(\newcommand{\avec}{\mathbf a}\) \(\newcommand{\bvec}{\mathbf b}\) \(\newcommand{\cvec}{\mathbf c}\) \(\newcommand{\dvec}{\mathbf d}\) \(\newcommand{\dtil}{\widetilde{\mathbf d}}\) \(\newcommand{\evec}{\mathbf e}\) \(\newcommand{\fvec}{\mathbf f}\) \(\newcommand{\nvec}{\mathbf n}\) \(\newcommand{\pvec}{\mathbf p}\) \(\newcommand{\qvec}{\mathbf q}\) \(\newcommand{\svec}{\mathbf s}\) \(\newcommand{\tvec}{\mathbf t}\) \(\newcommand{\uvec}{\mathbf u}\) \(\newcommand{\vvec}{\mathbf v}\) \(\newcommand{\wvec}{\mathbf w}\) \(\newcommand{\xvec}{\mathbf x}\) \(\newcommand{\yvec}{\mathbf y}\) \(\newcommand{\zvec}{\mathbf z}\) \(\newcommand{\rvec}{\mathbf r}\) \(\newcommand{\mvec}{\mathbf m}\) \(\newcommand{\zerovec}{\mathbf 0}\) \(\newcommand{\onevec}{\mathbf 1}\) \(\newcommand{\real}{\mathbb R}\) \(\newcommand{\twovec}[2]{\left[\begin{array}{r}#1 \\ #2 \end{array}\right]}\) \(\newcommand{\ctwovec}[2]{\left[\begin{array}{c}#1 \\ #2 \end{array}\right]}\) \(\newcommand{\threevec}[3]{\left[\begin{array}{r}#1 \\ #2 \\ #3 \end{array}\right]}\) \(\newcommand{\cthreevec}[3]{\left[\begin{array}{c}#1 \\ #2 \\ #3 \end{array}\right]}\) \(\newcommand{\fourvec}[4]{\left[\begin{array}{r}#1 \\ #2 \\ #3 \\ #4 \end{array}\right]}\) \(\newcommand{\cfourvec}[4]{\left[\begin{array}{c}#1 \\ #2 \\ #3 \\ #4 \end{array}\right]}\) \(\newcommand{\fivevec}[5]{\left[\begin{array}{r}#1 \\ #2 \\ #3 \\ #4 \\ #5 \\ \end{array}\right]}\) \(\newcommand{\cfivevec}[5]{\left[\begin{array}{c}#1 \\ #2 \\ #3 \\ #4 \\ #5 \\ \end{array}\right]}\) \(\newcommand{\mattwo}[4]{\left[\begin{array}{rr}#1 \amp #2 \\ #3 \amp #4 \\ \end{array}\right]}\) \(\newcommand{\laspan}[1]{\text{Span}\{#1\}}\) \(\newcommand{\bcal}{\cal B}\) \(\newcommand{\ccal}{\cal C}\) \(\newcommand{\scal}{\cal S}\) \(\newcommand{\wcal}{\cal W}\) \(\newcommand{\ecal}{\cal E}\) \(\newcommand{\coords}[2]{\left\{#1\right\}_{#2}}\) \(\newcommand{\gray}[1]{\color{gray}{#1}}\) \(\newcommand{\lgray}[1]{\color{lightgray}{#1}}\) \(\newcommand{\rank}{\operatorname{rank}}\) \(\newcommand{\row}{\text{Row}}\) \(\newcommand{\col}{\text{Col}}\) \(\renewcommand{\row}{\text{Row}}\) \(\newcommand{\nul}{\text{Nul}}\) \(\newcommand{\var}{\text{Var}}\) \(\newcommand{\corr}{\text{corr}}\) \(\newcommand{\len}[1]{\left|#1\right|}\) \(\newcommand{\bbar}{\overline{\bvec}}\) \(\newcommand{\bhat}{\widehat{\bvec}}\) \(\newcommand{\bperp}{\bvec^\perp}\) \(\newcommand{\xhat}{\widehat{\xvec}}\) \(\newcommand{\vhat}{\widehat{\vvec}}\) \(\newcommand{\uhat}{\widehat{\uvec}}\) \(\newcommand{\what}{\widehat{\wvec}}\) \(\newcommand{\Sighat}{\widehat{\Sigma}}\) \(\newcommand{\lt}{<}\) \(\newcommand{\gt}{>}\) \(\newcommand{\amp}{&}\) \(\definecolor{fillinmathshade}{gray}{0.9}\)While the focus of this textbook is on organic reactions occuring in living cells, if you are a chemistry major, or are planning to take a standardized exam such as the MCAT, you will need to be familiar with a number of laboratory synthesis reactions. Here, we review the lab synthesis reactions covered in this text, which include most of the reactions typically covered in traditional organic texts. Click on the chapter/section number for direct links to the section where these reactions are introduced.
NOTE: content below redirects to an older edition of the text, which differs from the current version in some content and organization.
alcohols converted into good leaving groups
Williamson ether synthesis
alkyl halide must be methyl or primary to avoid competing elimination
cyclic acetal ‘protects’ ketone/aldehyde group – stable to bases/nucleophiles
deprotect with aqueous acid
activates carboxylic acids
acetic anhydride is a good acetyl group donor (activated acetic acid)
adds acetyl group to acohols, amines
goes through enamine intermediate
haloform reaction – also works with Br2, I2
Wittig reaction
Grignard reagent – carbon nucleophile
No acidic protons can be present (it’s a strong base)
Can also use R-Cl
Grignards add to esters, acid chlorides twice
organolithium – similar to Grignard
Gilman reagent
Gilman reagent will react with alkyl, vinyl halides as well as carbonyls
Gilman reagent will add once to acid chlorides to make a ketone
nucleophilic aromatic substitution
Hoffman elimination - least substituted alkene produced
Cope elimination
anti-Markovnikov addition of water to alkene. Notice syn addition!
method to protect alcohol – remove with H3O+
another alcohol protecting group: remove with F- ion
watch out for the possibility of carbocation rearrangements!
watch out for the possibility of carbocation rearrangements!
ortho-para directing vs. meta-directing groups
Markovnikov addition of water without possibility of carbocation shifting
pinacol rearrangement
Hoffman rearrangement
Diels-Alder: cis/trans stereoselectivity
bicyclic Diels-Alder product - no stereoselectivity
Cope rearrangement
Claisen rearrangement
reduces aldehydes/ketones, but not carboxylic acid derivatives
reduces aldehydes, ketones, carboxylic acid derivatives
can reduce ester/amide to aldehyde (LiAlH4 can't do this)
alkynes, aldehyde, ketones, nitro groups also reduced by H2/Pt (but not acid derivatives!)
alkyne to cis-alkene
alkyne to trans-alkene
primary alcohol to acid
secondary alcohol to ketone
oxidation at the benzylic position
Swern oxidation
abbreviated PCC
cis diols cleaved, not trans
KMnO4 also oxidizes primary alcohols and aldehydes to acids
radical halogenation is regiospecific – depends on stablity of radical intermediate
NBS can be source of Br in radical halogenation reactions
regiospecificity: benzylic / allylic