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1.4.1 Acid-base Chemistry of Amino Acids

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    Amino acids by themselves have amino (pKa ~9.0-10.5) and carboxyl groups (pKa ~2.0-2.4) that can be titrated. At neutral pH the amino group is protonated, and the carboxyl group is deprotonated. The side chains of acid and basic amino acids, and some polar amino acids can also be titrated:

    Amino acid Functional Group Side chain pKa
    Cysteine -SH 8.3
    Serine -OH 13
    Threonine -OH 13
    Tyrosine -OH 10.1
    Aspartic acid -COOH 3.9
    Glutamic acid -COOH 4.3
    Histidine Imidazole ring 6.0
    Arginine Guanidino 12.5
    Lysine -NH2 10.5


    Physiological pH is near neutral. It would appear that only histidine is of physiological relevance. However, pKa values can be shifted significantly by neighboring charged groups in complex molecular structures.

    Reactions of amino acids

    • Free amino acids (excluding proline) share similar chemical reactivities due to the common amino and carboxyl groups.
    • Different amino acid side chains have different chemical reactivities. Therefore,
    • reactivities of different proteins reflects the composition of the unique sequence of amino acids in their structure.
    Figure Some common carboxyl-group reactivities


    Figure common side chain reaction involving cysteine

    NOTE: This can covalently link two polypeptide chains in a "disulfide bond" crosslink


    1.4.1 Acid-base Chemistry of Amino Acids is shared under a CC BY-NC-SA 4.0 license and was authored, remixed, and/or curated by LibreTexts.

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