1.1: Open Access Readings

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May 10, 2022
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- Modules
- 1.2: Introduction to Fermentation and Microbes

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Open Access Resources for Fermentation Course by Topic

Basic Metabolism

Structure and Reactivity, Reactivity 1
MP. Metabolic Pathways
GL. Mechanisms of Glycolysis
TC. Mechanisms of the TCA Cycle
FA. Mechanisms of Fatty Acid Metabolism
Lumen Learning Glucose Metabolism

Microbial Metabolism

Lumen Learning, Microbiology, Metabolic Biological Pathways
P. Jurtshuk, Chapter 4: Bacterial Metabolism , in Medical Microbiology, S. Baron, Ed, 4th Edition, Galveston (TX). University of Texas Medical Branch at Galveston; 1996.

Acetic Acid Bacteria and Vinegar

Mamlouk and Gullo, Acetic Acid Bacteria, Indian J. Microbiology, 2013, 53(4), 377-384
Mas, et. al., Acetic Acid Bacteria and the Production and Quality of Wine Vinegar, Scientific World Journal, 2014, 2014, 1-6.
Christopher Anthony, Quinoprotein Catalyzed Reactions, Biochem J., 1996, 320, 697-711
Gómez-Manzo, et. al., The Oxidative Fermentation of Ethanol, Int J Mol Sci. 2015, 16(1), 1293–1311

Carbohydrates

Saylor, Ch 16. Carbohydrates
Khan Academy, Carbohydrates

Fermented Vegetables

Pérez-Díaz IM, Breidt F, Buescher RW, Arroyo-Lopez FN, Jimenez-Diaz R, Bautista-Gallego J, Garrido-Fernandez A, Yoon S, Johanningsmeier SD. 2014. Chapter 51: Fermented and Acidified Vegetables In: Pouch Downes F, Ito KA, editors. Compendium of Methods for the Microbiological Examination of Foods, 5th Ed. American Public Health Association.
Franco W, Johanningsmeier SD, Lu J, Demo J, Wilson E, Moeller L. 2016 Chapter 7: Cucumber fermentation In: Paramithiotis, S., Editor. Lactic Acid Fermentation of Fruits and Vegetables. Boca Raton, FL: CRC Press. pp 107-155.
Fleming HP, McFeeters RF. 1985. Residual sugars and fermentation products in raw and finished commercial sauerkraut In 1984 Sauerkraut Seminar, N. Y. State Agric. Expt. Sta. Special Report No. 56:25-29.
Johanningsmeier, et. al. Chemical and Sensory Properties of Sauerkraut J. Food Sci., 2005, 70(5), 343-349.

Cheese

University of Guelph, Cheese Making Technology eBook
Cheese - the short version
Cheese Families
Cultures
Milk Structures & Coagulation Processes
Simon Cotton, Education in Chemistry, Royal Society of Chemistry, Really Cheesy Chemistry
Propionic Acid, H. Hettinga and G. W. Reinbold,The Propionic Acid Bacteria: A Review, Journal of Milk and Food Technology, 1972, 35(6), 358-372.
H. Falentin, S. Deutsch, et. al. Propionic Acid Fermentation, PLOS One, 2010 https://doi.org/10.1371/journal.pone.0011748

Yogurt

A Zourari, Jp Accolas, Mj Desmazeaud. Metabolism and biochemical characteristics of yogurt bacteria. A review. Le Lait, INRA Editions, 1992, 72 (1), pp.1-34.

Bread

Brewer’s Journal, Science/Maillard Reaction
Struyf, et. al. Bread Dough and Baker's Yeast: An Uplifting Synergy, Comprehensive Reviews in Food Science and Food Safety, 2017, 16, 850-867.
Guy Crosby, The Cooking Science Guy, Explaining Gluten

Beer

John Palmer, How to Brew 1st Edition
Bokulich and Bamforth, Microbiology of Malting and Brewing, Microbiol Mol Biol Rev. 2013, 77(2), 157–172.
Holt, et. al, The Molecular Biology of Fruity and Floral Aromas in Beer and Other Alcoholic Beverages, FEMS Microbiology Reviews, 2019, 43, 193–222
Craft Beer.com Beer Styles Study Guide (also available as .pdf download on their site)

Cider

Andrew Lea, The Science of Cidermaking
Cousin, et. al., Microorganisms in Fermented Apple Beverages: Current Knowledge and Future Directions Microorganisms, 2017, 5(3), 39.
Cox and Henick-Kling, Chemiosmotic Energy from Malolactic Fermentation, J. Bacteriol. 1989, 5750-5752

Wine

A list of varietals (and pronunciations) is available from J. Henderson, Santa Rosa Junior College.
The Wine Spectator has an article by J. Laube and J. Molesworth on Varietal Characteristics.
Niculescu, Paun, and Ionete, The Evolution of Polyphenols from Must to Wine, In Grapes and Wine, A. M. Jordão, Ed., 2018, InTechOpen.
Garrido & Borges, Wine and Grape Polyphenols, Food Research International, 2013, 54, 1844–1858
Chantal Ghanam, Study of the Impact of Oenological Processes on the Phenolic Composition of Wines, Thesis, Université de Toulouse.
Casassa, Flavonoid Phenolics in Red Winemaking In Grapes and Wine, A. M. Jordão, Ed., 2018, InTechOpen.
Dangles & Fenger, The Chemical Reactivity of Anthocyanins, Molecules, 2018, 23(8), 1970-1993.
He, et. al., Anthocyanins and Their Variation in Red Wines, Molecules, 2012, 17(2), 1483-1519.
Goold, et. al. Yeast's balancing act between ethanol and glycerol production in low-alcohol wines, Microbial Biotechnology 2017, 10(2), 1-15.
J. Harbertson, A Guide to the Fining of Wine, Washington State University
E.J. Bartowsky, Bacterial Spoilage of Wine, Letters in Applied Microbiology, 2009, 48, 149–156.
Belda, et. al., Microbial Contribution to Wine Aroma, Molecules 2017, 22(2), 189

Distilled Spirits

Artisanal Distilling, A Guide for Small Distilleries, Kris Berglund
Coldea, Mudura & Socaciu, Chapter 6: Advances in Distilled Beverages Authenticity and Quality Testing, In Ideas and Applications Toward Sample Preparation for Food and Beverage Analysis, M. Stauffer, Ed., IntechOpen, 2017.
N. Spaho, Ch 6: Distillation Techniques in the Fruit Spirits Production, In Distillation – Innovative Applications and Modeling, M. Mendes, Ed., IntechOpen, 2017.
S. Canas, Phenolic Composition and Related Properties of Aged Wine Spirits: Influence of Barrel Characteristics. A Review, Beverages, 2017, 3(4), 55-77.

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