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6.4: Extraction Procedure

  • Page ID
    535986
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    Prepare the Setup

    1. Obtain a separatory funnel.
      • A Teflon stopcock is typically used. If it was taken apart to dry, reassemble the stopcock, placing the parts in the appropriate order. Be sure that the Teflon stopcock is moderately tight so that it can still easily turn, but is not so loose that liquid can seep around the joint.
      • Also obtain a stopper that fits well in the top joint of the funnel.
    2. Place the separatory funnel in a ring clamp attached to a ring stand or latticework.
    Four pictures showing the parts of a separatory funnel lettered a through d. a) whole separatory funnel. b) the stopcock components in the correct order. c) glass stopcock. d) the separatory funnel placed in a cushioned ring clamp.
    a) Separatory funnel, b) Correct order of stopcock components, c) Glass stopcock, d) Funnel in ring clamp

    Add the Solutions

    1. Before pouring anything into a separatory funnel, be sure that the stopcock is in the "closed" position, where the stopcock is horizontal. As a fail-safe, always position an Erlenmeyer flask beneath the separatory funnel before pouring. This can catch liquid in case the stopcock is accidentally left open, or if the stopcock is loose and liquid leaks through unintentionally.
    2. Using a funnel, pour the liquid to be extracted into the separatory funnel. A separatory funnel should never be used with a hot or warm liquid.
    3. Pour a quantity of the extractive solvent into the separatory funnel, as indicated by the procedure. It is unnecessary to use precise quantities of solvent for extractions, and the volumes can be measured in a graduated cylinder. If a procedure calls for 20mL of solvent, it is acceptable if between 20-25mL is used.
    Four images lettered a through d. a) Two images of stopcocks. The top is closed with the red bars horizontal and the bottom is open with the red bars vertical. b) Pink liquid is poured into the separatory funnel which is placed over an Erlenmeyer flask in a ring clamp. c) A clear liquid is poured into the separatory funnel with the pink liquid. d) The separatory funnel before the liquids are mixed.
    a) Closed and open stopcocks, b) Pouring in liquid with a funnel: notice the Erlenmeyer flask positioned below as a fail-safe, c) Pouring in the organic solvent, d) Separatory funnel before mixing

    Mix the Solutions

    1. Place the stopper on the funnel, and hold the funnel such that the fingers of one hand securely cover the stopper, while the other hand grips the bottom of the funnel.
    2. Gently invert the funnel, and swirl the mixture a little. Although it is not uncommon for some liquid to creep into the ground glass joint when inverted, it should be minimal.
    3. Pressure may build up inside the separatory funnel when solutions are mixed, so immediately after swirling, and with the funnel still inverted, "vent" the funnel by briefly opening the stopcock to allow for a release of pressure. With highly volatile solvents (like diethyl ether), a definite "swoosh" can be heard upon venting, and small amounts of liquid may even sputter out the stopcock. Safety note: Never point the stopcock toward someone as you vent, as it's possible some liquid may splatter onto him or her.
    4. Close the stopcock and mix the solutions a bit more vigorously, periodically stopping to vent the system.
    5. Place the separatory funnel upright in the ring clamp to allow the layers to fully separate. The interface between the layers should settle rather quickly, often within 10 seconds or so. If the interface is clouded or not well defined (an emulsion has formed), see the next page.
    Three images lettered a through c. a) A separatory funnel with a thin layer of clear liquid on top of a thick layer of pink liquid. The stopcock is closed b) Inverted separatory funnel with the clear and pink liquids mixed. c) Inverted separatory funnel with the stopcock opened.
    a) Holding the separatory funnel before shaking, b) Inverting the funnel to mix the components, c) Venting to release pressure.

    Separate the Layers

    1. Liquid will not drain well from a separatory funnel if the stopper remains on, as air cannot enter the funnel to replace the displaced liquid. Before draining liquid from a separatory funnel, remove the stopper.
    2. Drain the majority of the bottom layer into a clean Erlenmeyer flask, positioning the ring clamp so that the tip of the separatory funnel is nestled in the Erlenmeyer flask to prevent splashing. Stop draining when the interface is within 1cm of the bottom of the stopcock.
    3. Gently swirl the funnel to dislodge any droplets clinging to the glass.
    4. Further drain the bottom layer, stopping when the interface just enters the stopcock chamber.
    Four images lettered a through d. a) the stopper is removed from the separatory funnel. b) The stopcock on the separatory funnel is open with orange liquid draining into an Erlenmeyer flask. c) A separatory funnel with blue liquid and an active stirring rod. d) Stopcock being closed on the separatory funnel.
    a) Taking the stopper off before draining the funnel, b) Draining to the interface, c) Clinging droplets, d) Stopping when the interface is in the stopcock

    Notes:

    • It is proper technique to drain the bottom layer through the stopcock, and to pour out the top layer from the top of the funnel. This method minimizes re-mixing the solutions, as only the lower layer touches the stem of the funnel.
    • Never throw away any liquids from an extraction until you are absolutely sure that you have the desired compound. Undesired layers can be properly disposed of when the desired compound is in your hands (e.g. after the rotary evaporator has removed the solvent). Mistakes made during extractions (e.g. carrying on with the wrong layer), can be solved as long as the solutions have not been placed in the waste container.
    • To clean a separatory funnel, first rinse it with acetone into a waste container. Then wash the funnel with soap and water at your benchtop. Disassemble the Teflon stopcock to dry. Then reassemble and put back into your lab drawer.
    Three images lettered a through c. a) Liquid being poured from the separatory funnel to an Erlenmeyer flask. b) Two Erlenmeyer flasks. Left labeled "top organic layer" with orange liquid. Right labeled "bottom organic layer" with clear liquid. c) Dismantled separatory funnel drying on a paper towel.
    a) Pouring out the top layer, b) Labeled layers, c) Drying the separatory funnel with a disassembled stopcock

    Adapted from Step-by-step procedure for Extractions (Large Scale) by Lisa Nichols.


    6.4: Extraction Procedure is shared under a CC BY-NC 4.0 license and was authored, remixed, and/or curated by LibreTexts.

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