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5.4: Model Studies for Nitrogen Binding

  • Page ID
    190034
  • If nitrogen is to be reduced, it first has to be bound. However, nitrogen is remarkably inert. Chemists routinely run reactions under an atmosphere of pure nitrogen because of its lack of reactivity. Fine chemical companies bottle compounds under nitrogen to ensure that the contents remain in pristine condition while sitting on the shelf. If nitrogen doesn't react with anything, how does it react with an iron atom in nitrogenase?

    What is the weakness of the dinitrogen molecule? That turns out to be related to its strength. The enormously strong nitrogen-nitrogen triple bond is composed of a sigma bond and two pi bonds. The corresponding antibonding orbital allows nitrogen to act as a pi acceptor.

    That means there is a good chance of getting the very unreactive nitrogen molecule to bind to a transition metal. An occupied d orbital on an iron atom could back-donate into that nitrogen orbital, holding the dinitrogen more securely on the iron. The nitrogen can be bound.

    Just to make that scenario more likely, the metal could be tuned in order to maximise its ability to backbond with the nitrogen. That means it needs a lot of electron density. An electron-rich metal atom would readily donate electron density into nitrogen's pi acceptor orbital. Then the nitrogen would bind more tightly.

    One factor that would help is a low oxidation state. A low oxidation state on the metal would leave it with more electron density to donate to the nitroge pi acceptor orbital.

    A secondary factor is strongly donating ancillary ligands. These other ligands would play a supporting role by lending additional electron density to the transition metal so that it could bind to the nitrogen even more tightly.

    As with other metalloproteins, researchers have spent a great deal of effort studying nitrogenase. They have also expended a tremendous amount of effort studying model compounds. Model compounds are simpler molecules that incorporate selected aspects of the metalloprotein. By intentionally designing a model compound to include certain features of the metal centre in the protein, researchers can evaluate what role those features play in the reactivity of the metalloprotein.

    It's pretty obvious that we might want a model compound for nitrogenase to contain iron atoms. After all, nitrogenase contains a number of iron atoms at its active site. Of course, it also contains molybdenum, or in some cases vanadium. A model compound might contain those atoms, instead. Alternatively, it could contain atoms other than the ones found in the native enzyme. That would be a sort of pushing-the-envelope approach. If an electron-rich metal is important, how electron rich can we go? Or how electron-poor can we get and still be able to bind nitrogen? By exploring things that aren't part of the natural system, we might better see the importance of those things that are.

    The same is true with the ancillary ligands, those that support the metal but that may not be directly involved in catalysis. The electron-rich sulfides in nitrogenase may be an important part of a model compound. So could phosphines, whose phosphorus donor atoms are of a similar size to sulfur. Phosphines are commonly used industrially in organometallic catalysis and might make good mimics of the sulfur ligands in nitrogenase.

    Exercise \(\PageIndex{1}\)

    Jonas Peters' lab (Caltech) has developed a new system in an attempt to model the effect of a reported carbon atom in the structure of Fe/Mo cofactor of nitrogenase (J. Am. Chem. Soc. 2014, 136, 1105-1115). The system catalytically produces ammonia in the presence of N2, acid and Na.
    a) Fill in the oxidation states.
    b) Fill in missing reagents.
    c) Fill in d orbital splitting diagrams.
    d) Explain the differences in the N-N stretching frequencies.

    NRPeters.png
    Answer

    d) As the Fe becomes more reduced, the N-N stretching frequency decreases. That's because the more electron density there is on the Fe, the more it is able to backbond to the N2 (N2 is a π acceptor).